------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007962.1:subseq_28856548,103463_ Strand = - Positions = 49592 - 49518
 Found by:  Infernal (score=29.36) Covels (score=33.17)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -18.19

         ..(((((((.......((((((((((.(((((................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .({(((((((--....{[[[(((((({-((((................))))-}))))))]]]}..--...)))))))}).
 target  UGAGGUGAUG--UUAAUGAAGGUCUGC-GCUGAAGGCAGGAAGACUGCUAGC-UCAGACUGGAUGU--CCCCAUUGCUCCU
                         ****            ^^                          ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = CM007962.1:subseq_28856548,103463_ Strand = + Positions = 87799 - 87863
 Found by:  Infernal (score=13.51) Covels (score=4.8)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -14.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((---....([[{((((({((((------((.......))))))})))))}]])----....))))})...
 target  UAUGUUUGG---ACCAUGAUAGUUUGUUGG------UGAUGUGGACACCAAGGAACUUGAA----ACUCUCGACCUGU
                         ****                                     ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = CM007962.1:subseq_28856548,103463_ Strand = - Positions = 84586 - 84512
 Found by:  Infernal (score=10.97)
 Stem2 length = 8   Apical loop length = 21   Insertion in stem2 = 1, 0
 Free Energy = -4.0

         ..(((((((.......((((((((((.(((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....((((((--....([[(({((((.(((.....................)))))))}))]])----...))))))....
 target  AUGAGCUAUG--UGUAUGAAUAUUUAUAUAACAAAUCCCCCUCUUCACGUCUAUUAGACGUGAA----AACUAUAGCAGAA
                         ****            ^^^                         ****